I suppose you are pointing to Adobe Captivate? Can you please be more specific?  When you mention ‘system audio’ it could be that you talk about a software simulation or a Video Demo which are both captured. It is possible to indicate ‘not’ to capture system audio, which is even the default setting.

However if you are pointing to a normal cptx-project where you have inserted interactive objects like buttons (all types), Text Entry Boxes, it is possible to take out the Clicks using the Properties panel of the interactive object. By default it is turned on. See the included screenshot.

Let me know if this was not what you are looking for. Turning on ‘mute’ seems to be a bridge too far indeed if you have narration.

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By GIL